Built for Clarity
Clarity for every study
Ensure reproducibility and uncover hidden variables with monitoring built for microbial precision.
Reproducibility
Track microbial shifts that could confound results.
Cohort validation
Confirm consistency across groups, timepoints, or facilities.
Drift detection
Identify microbial instability before it impacts phenotypes.
Layered insights
Combine microbiome data with genotype or phenotype.
Accessible analytics
High-resolution profiling without managing your own pipeline.
Even subtle housing or diet changes can reshape the microbiome.
Value Propositions
Substrain-level microbiome insight
Substrain-level MB insight section - change to “Shotgun sequencing delivers high-resolution, substrain-level microbiome data. Powered by the One Codex® platform, results provide best-in-class taxonomic clarity you can trust.
A simple end-to-end workflow
We provide everything needed to collect and ship samples with confidence. Easy ordering through QuickOrder keeps your workflow fast, intuitive, and efficient.
Results you can act on
Receive comprehensive microbiome results within two weeks of sample submission. Faster insights help you monitor changes and protect research reproducibility.
Deeper insight with expert support
Shotgun sequencing reveals microbiome details that other methods miss, helping you understand potential impacts on your research. Gold-standard bioinformatics, an intuitive interface, and dedicated support ensure clarity at every step.
I realized I have been setting up the crosses a lot faster, because I got the genotyping results a lot faster. Everything was in the system, so I knew exactly which mice to pull and which to cull. The Transnetyx Colony system made it very easy and it just became second nature. When you multiply this by strain, it adds up very quickly.
Boston Researcher
Our Process
Turn samples into insight
Place order
In your Quickorder account using the ordering wizard or CSV upload.
Ship
Submit two fecal pellets per mouse in ambient-stabilized kits. No dry ice required.
Sequence & analyze
Shotgun metagenomics for taxonomic and functional profiling.
Explore results
Access dashboards in BiotaBase™ and full, interactive results in One Codex, and download publication quality figures.
Analyze your Data
Seamless analysis
BiotaBase™
BiotaBase™ helps researchers manage and visualize animal microbiome data to monitor shifts that impact reproducibility. This overview dashboard is designed for monitoring applications and pulls data from One Codex for to allow researchers to quickly visualize and compare microbiome data across studies, time points, and animal cohorts. By integrating microbiome profiles with metadata, BiotaBase helps track microbial trends, identify variability, and support reproducible, data-driven decisions throughout preclinical research.
One Codex
One Codex offers a best-in-class analysis platform and database for microbial genomics, and allows for deeper and customized analysis of samples. as well as sequencing of human samples in the Transnetyx pipeline. Animal and human results are stored together within One Codex for seamless analysis. One Codex also allows full cloud-based access to raw data and publication-quality figure generation.
Learn moreKey Features
Built for clarity.
Designed for
integration.
Shotgun metagenomics
Allows deeper taxonomic resolution and the detection of bacteria, viruses, fungi, and archaea
BiotaBase™ dashboard
Trends, comparisons, and references to the Transnetyx diversity index (FYI this tool does not allow data sharing)
Ambient sample shipping
No dry ice, simple collection
Exportable & API-ready data
CSV, FASTA/Q, BIOM, PNG, or JPEG
Complete microbiome insight for reproducible research
Monitoring
Monitoring applications for reproducible research
Maintain stability. Detect drift. Protect reproducibility.
Observe microbiome patterns across timepoints, facilities, and cohorts.
Trusted by Many
Proven by data. Trusted by scientists.
Validated with over 50,000 samples from diverse genetic backgrounds
Cited in peer-reviewed studies as essential for reproducibility
Collaborate with PhD-level microbiome experts for study design support — included with every study.
Try it Today
