Intelligence at Scale
Intelligence for every colony
Simplify daily management with Colony+AMI for predictive insights that keep your operations efficient and reproducible.
Control
Manage cages, tasks, strains, and breeding in one platform.
Efficiency
Flag underproducing breeders and reducing unnecessary animal waste.
Optimization
Forecast demand, consolidate cages, and align breeding to goals.
Integration
Flow genotyping results directly into colony records.
Scalability
Designed for both small labs and large vivaria
Data export
Export list views to excel or PDF at any time.
Add AMI anytime to expand your Colony Basic account with advanced intelligence
Try it Today
Scalable accuracy for every study
See it in action
Enter your enrollment key at the link below to try out the Colony software.
If you don’t have an enrollment key, you can enter the key COMMUNITY
to explore the software.
Try ColonyShare Colony with your lab
Want to set up your own group and begin using Colony in your lab?
Contact our team to get a personalized enrollment key
and begin sharing your data.
Our Process
How it works?
Set up Colony
Import or define strains, rooms, racks, lineage, users, and tasks.
Manage data in real time
Record cross setups, litters, tagging, transfers, and status — all in one dashboard.
Order genotyping via Colony
Place genotype orders; results populate automatically into the linked mouse records.
Enable AMI (optional)
Connect AMI to Colony data; it begins modeling trends, suggesting breeding plans, and raising alerts.
Review & act
Accept, adjust or ignore AMI’s suggestions. Track performance metrics over time.
Key Features
Maximize your cage
output with AMI
Cage consolidation
Get real-time alerts when low-productivity breeding creates opportunities to consolidate cages and optimize space utilization.
Project planning & estimating
Build new project plans or optimize existing ones using predictive insights that improve accuracy and resource forecasting.
Non-productive breeder management
Automatically identify non-productive breeders and receive intelligent recommendations tailored to your active projects.
Mendelian issue management
Track every litter for Mendelian issues and get proactive warnings when underproducing genotypes are detected.
Pup survival management
Monitor pup survival rates in real time and compare outcomes against your project goals.
Cage card printing
Print and manage cage cards for breeding, weaning, and stock cages directly from your digital workspace.
One platform. Two options.
Colony
Colony
Colony delivers an intuitive, user-friendly platform built to simplify daily workflows, optimize breeding operations, and enhance overall research efficiency. Designed for researchers, technicians, and animal care teams, Colony Basic makes complex management effortless
Effortlessly manage breeding pairs, monitor litter outcomes, and gain insights to enhance reproductive efficiency and reduce nonproductive cycles.
Plans
Plans that fit your goals
Standard
Colony
Build Your Foundation
Simplify complex breeding workflows and ensure complete accuracy from cage to data report.
Manage breeding, litters, and cage records in one place
Interactive workflows and task calendars
Barcode & QR code scanning for easy tracking
Automated Genotyping integration
Web-based access for your whole team
Premium
Colony+AMI
Unlock Predictive Power
Transform your colony data into predictive insights that drive efficiency, accuracy, and animal welfare.
Breeding planning and non-productive breeder alerts
Pup survival, Mendelian ratios, and sex-ratio tracking
Cage consolidation and footprint optimization
Pedigree and ancestry insights
Pedigree and ancestry insights
Measurable Gains
Turning research goals into measurable gains
With Colony+AMI, labs have achieved:
Better planning and project estimating
Maximized facility space utilization
Easier cage consolidation and resource management
Increased pup counts through improved breeding efficiency
Lower animal care and breeding costs
Reduced animal use through thoughtful planning and oversight
Proven results, no spreadsheets in sight.
When you multiply this by strain, it adds up very quickly
Lab manager on Colony + AMI
Labs using Colony + AMI report
~
0%
fewer unnecessary cages
Genotype assignment time improves by
~
0days
compared to internal benchmarks
Backed by Transnetyx’s foundation:
0
%
accuracy
Try it Today
AMI Features
AMI never sleeps
AMI effortlessly tracks breeders, ages, pups, Mendelian ratios, cages, and more—24 hours a day, 7 days a week. At the same time, AMI considers every aspect of your Cagenomics, aligning your research parameters with your colony’s data to deliver actionable insights that help you:
Maximizing ROI
Cage Consolidation
Planning and Estimating Projects
Non-Productive Breeder Management
Mendelian Issue Management
